iqtree2: update to 2.4.0

science/iqtree2/Portfile

@@ -5,12 +5,11 @@ PortGroup               github 1.0
 PortGroup               cmake 1.1
 PortGroup               boost 1.0
 
-github.setup            iqtree iqtree2 2.1.3 v
+github.setup            iqtree iqtree2 2.4.0 v
 github.tarball_from     archive
-revision                1
+revision                0
 
 categories              science
-platforms               darwin
 license                 GPL-2
 maintainers             {reneeotten @reneeotten} openmaintainer
 
@@ -24,24 +23,40 @@ long_description        The IQ-TREE software was created as the successor of IQP
                         computing to speed up the analysis. IQ-TREE automatically performs \
                         checkpointing to resume an interrupted analysis.
 
-homepage                http://www.iqtree.org/
+homepage                https://iqtree.github.io
 
-checksums               rmd160  f430a8a41380ab97741aaa9a24af1ac91e1b23d5 \
-                        sha256  d34d16df5eb4d7368ecbfa14d2dd64845b71fd361583db2cd09f8fac72882278 \
-                        size    5301281
-
-patchfiles-append       patch-CMakeLists.txt.diff
-
-configure.args-append   -DIQTREE_FLAGS=omp
+fetch.type              git
+post-fetch {
+    system -W ${worksrcpath} "git submodule update --init"
+}
 
 boost.depends_type      build
+boost.version           1.88
 
 depends_build-append    path:share/pkgconfig/eigen3.pc:eigen3 \
-                        port:libomp \
                         port:zlib
 
-compiler.cxx_standard   2011
-compiler.cpath-append   ${prefix}/include/libomp
+depends_lib-append      port:lsd2
+
+compiler.cxx_standard   2017
+compiler.openmp_version 2.5
+
+configure.args-append   -DUSE_CMAPLE=OFF \
+                        -DUSE_LSD2=ON \
+                        -DBUILD_TESTING=OFF \
+                        -DIQTREE_TEST=OFF \
+                        -DFETCHCONTENT_FULLY_DISCONNECTED=ON \
+                        -DFETCHCONTENT_TRY_FIND_PACKAGE_MODE=ALWAYS
+
+if {${os.platform} eq "darwin" && ${os.major} < 16} {
+    configure.args-append \
+                        -DIQTREE_FLAGS=oldmac
+}
+
+if {[string match *clang* ${configure.compiler}]} {
+    configure.cxxflags-append   -I${prefix}/include/libomp
+    configure.ldflags-append    -L${prefix}/lib/libomp
+}
 
 post-destroot {
     xinstall -d ${destroot}${prefix}/share/doc/${name}

science/iqtree2/files/patch-CMakeLists.txt.diff

@@ -1,17 +0,0 @@
---- CMakeLists.txt.orig	2020-12-17 22:57:53.000000000 -0500
-+++ CMakeLists.txt	2020-12-17 22:58:49.000000000 -0500
-@@ -146,14 +146,6 @@
-     add_definitions(-DWIN32)
- elseif (APPLE)
-     message("Target OS     : Mac OS X")
--    # to be compatible back to Mac OS X 10.7
--    if (IQTREE_FLAGS MATCHES "oldmac")
--        add_definitions("-mmacosx-version-min=10.5")
--        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -mmacosx-version-min=10.5")
--    else()
--        add_definitions("--target=x86_64-apple-macos10.7")
--        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} --target=x86_64-apple-macos10.7")
--    endif()
-     SET(CMAKE_FIND_LIBRARY_SUFFIXES .a ${CMAKE_FIND_LIBRARY_SUFFIXES})
- elseif (UNIX)
-     message("Target OS     : Unix")