mirror of
https://github.com/macports/macports-ports.git
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60 lines
2.2 KiB
Tcl
60 lines
2.2 KiB
Tcl
# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
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PortSystem 1.0
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PortGroup github 1.0
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github.setup samtools htslib 1.23.1
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revision 0
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checksums rmd160 ca8b83e44809a1aa9436626b58f95f94bb86ff8a \
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sha256 f8a3f36effeec38f043c53ab1f2d9ed45064f14205c5ef8e3c815763b90803c4 \
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size 4987046
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categories science
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maintainers {ryandesign @ryandesign} openmaintainer
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license MIT BSD
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description C library for accessing SAM, CRAM, VCF, BCF and other \
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file formats used for high-throughput sequencing data
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long_description HTSlib is an implementation of a unified C library for \
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accessing common file formats, such as SAM, CRAM, VCF \
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and BCF, used for high-throughput sequencing data. It \
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is the core library used by SAMtools and BCFtools.
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homepage https://www.htslib.org
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github.tarball_from releases
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use_bzip2 yes
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depends_lib port:bzip2 \
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port:curl \
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port:libdeflate \
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port:xz \
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port:zlib
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# cpuid_count, get_cpuid_max
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compiler.blacklist-append {clang < 503}
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# https://trac.macports.org/wiki/WimplicitFunctionDeclaration#strchr
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configure.checks.implicit_function_declaration.whitelist-append strchr
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configure.args --enable-bz2 \
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--with-libdeflate \
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--enable-gcs \
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--enable-libcurl \
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--enable-lzma
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platform darwin {
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if {[vercmp ${macosx_deployment_target} < 10.10]} {
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# https://github.com/samtools/htslib/issues/1941
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configure.args-append \
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--disable-ref-cache
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}
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}
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post-destroot {
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xinstall -d ${destroot}${prefix}/share/doc/${name}
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xinstall -m 0644 -W ${worksrcpath} \
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LICENSE NEWS README \
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${destroot}${prefix}/share/doc/${name}
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}
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