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58 lines
2.0 KiB
Tcl
58 lines
2.0 KiB
Tcl
# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
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PortSystem 1.0
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name prc
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version 1.5.6
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categories math science
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platforms darwin
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maintainers {ryandesign @ryandesign} openmaintainer
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license GPL-2+
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description program for aligning and scoring two profile hidden \
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Markov models
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long_description PRC is a stand-alone program for aligning and scoring two \
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profile hidden Markov models. This can be used to detect \
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remote relationships between profiles more effectively \
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than by doing simple profile-sequence comparisons. \
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PRC takes into account all transition and emission \
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probabilities in both hidden Markov models. \
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PRC can read SAM, HMMER, PSI-BLAST and FASTA files.
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homepage https://supfam.mrc-lmb.cam.ac.uk/PRC/
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master_sites ${homepage}programs/PRC-${version}
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extract.suffix .tgz
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distfiles ${name}-${version}-src${extract.suffix}
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checksums rmd160 1a79a72cf7329a6cb4433d2cf67c4ce123f1b605 \
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sha256 2ad9dcd0621a7262b5754426a62cd630dfbf14b04481fde116fa169d89249394 \
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size 121380
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patchfiles patch-configure.diff \
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patch-Makefile.in.diff
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destroot {
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xinstall -W ${worksrcpath} \
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convert_to_prc \
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merge_aligns.pl \
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prc \
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${destroot}${prefix}/bin
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set docdir ${prefix}/share/doc/${name}
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xinstall -d ${destroot}${docdir}
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xinstall -W ${worksrcpath} -m 0644 \
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COPYING \
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LICENSE \
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README \
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${destroot}${docdir}
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xinstall -d ${destroot}${prefix}/share/examples
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copy ${worksrcpath}/example ${destroot}${prefix}/share/examples/${name}
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}
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livecheck.type regex
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livecheck.url ${homepage}programs/
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livecheck.regex PRC-(\[0-9.\]+)/
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