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42 lines
1.6 KiB
Tcl
42 lines
1.6 KiB
Tcl
# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
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PortSystem 1.0
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PortGroup R 1.0
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R.setup bioconductor Bioconductor ShortRead 1.62.0
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revision 0
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categories-append bioconductor
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maintainers nomaintainer
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license Artistic-2
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description FASTQ input and manipulation
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long_description {*}${description}
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checksums rmd160 da8875044bccc06edae361e1845e5c96373aeac4 \
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sha256 550ead16ef1aa2dca0f221a570ca8216b077d1627701c824cf45773145c7b174 \
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size 5313872
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depends_lib-append port:R-Biobase \
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port:R-BiocGenerics \
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port:R-BiocParallel \
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port:R-Biostrings \
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port:R-GenomeInfoDb \
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port:R-GenomicAlignments \
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port:R-GenomicRanges \
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port:R-hwriter \
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port:R-IRanges \
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port:R-latticeExtra \
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port:R-pwalign \
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port:R-Rhtslib \
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port:R-Rsamtools \
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port:R-S4Vectors \
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port:R-XVector \
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port:R-zlibbioc
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depends_test-append port:R-BiocStyle \
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port:R-biomaRt \
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port:R-RUnit \
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port:R-GenomicFeatures \
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port:R-yeastNagalakshmi
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# One example fails: https://github.com/Bioconductor/ShortRead/issues/13
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test.run yes
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