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Joshua Root
47 lines
1.6 KiB
Tcl
47 lines
1.6 KiB
Tcl
# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
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PortSystem 1.0
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PortGroup github 1.0
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github.setup nh13 BFAST 0.7.0a bfast.
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# Change github.tarball_from to 'releases' or 'archive' next update
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github.tarball_from tarball
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revision 0
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checksums rmd160 95daa3e29c7c7d8156bd743a28f3bccfd9dc94f6 \
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sha256 ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e \
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size 2456617
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name bfast
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categories science
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maintainers {ryandesign @ryandesign} openmaintainer
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license GPL-3
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description a tool for fast and accurate sequence alignment
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long_description BFAST facilitates the fast and accurate mapping of \
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short reads to reference sequences, where mapping \
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billions of short reads with variants is of utmost \
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importance.
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set vnumonly [lindex [regexp -inline -- {[0-9.]+} ${version}] 0]
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master_sites sourceforge:project/${name}/${name}/${vnumonly}
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distname ${name}-${version}
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depends_lib port:bzip2 \
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port:zlib
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patchfiles CFLAGS.patch
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post-patch {
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reinplace "s|@CFLAGS@|${configure.cflags} [get_canonical_archflags cc]|g" ${worksrcpath}/configure
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}
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# https://github.com/nh13/BFAST/issues/2
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compiler.c_standard 1989
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configure.cflags-append \
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-std=gnu89
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# This software is no longer maintained.
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# https://github.com/nh13/BFAST/issues/4
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livecheck.type none
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