Partially revert "Revert "Audit uses of IsRunning and GetState""

This reverts the revert commit bc67fc97c3,
except for the changes in BaseConfigLoader.cpp, which caused the bug
that made us revert 72cf2bdb87. PR 12917
contains an improved change to BaseConfigLoader.cpp, which can be merged
(or rejected) independently.

A few changes have also been made based on review comments.

Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/NativeLibrary.java

@@ -381,10 +381,16 @@ public final class NativeLibrary
    */
   public static native boolean IsRunning();
 
-  public static native boolean IsRunningAndStarted();
-
+  /**
+   * Returns true if emulation is running and not paused.
+   */
   public static native boolean IsRunningAndUnpaused();
 
+  /**
+   * Returns true if emulation is fully shut down.
+   */
+  public static native boolean IsUninitialized();
+
   /**
    * Writes out the JitBlock Cache log dump
    */

Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/features/settings/model/Settings.kt

@@ -36,7 +36,7 @@ class Settings : Closeable {
 
         if (isGameSpecific) {
             // Loading game INIs while the core is running will mess with the game INIs loaded by the core
-            check(!NativeLibrary.IsRunning()) { "Attempted to load game INI while emulating" }
+            check(NativeLibrary.IsUninitialized()) { "Attempted to load game INI while emulating" }
             NativeConfig.loadGameInis(gameId, revision)
         }
     }

Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/features/settings/model/view/RunRunnable.kt

@@ -20,5 +20,5 @@ class RunRunnable(
     override val setting: AbstractSetting? = null
 
     override val isEditable: Boolean
-        get() = worksDuringEmulation || !NativeLibrary.IsRunning()
+        get() = worksDuringEmulation || NativeLibrary.IsUninitialized()
 }

Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/features/settings/model/view/SettingsItem.kt

@@ -54,7 +54,7 @@ abstract class SettingsItem {
 
     open val isEditable: Boolean
         get() {
-            if (!NativeLibrary.IsRunning()) return true
+            if (NativeLibrary.IsUninitialized()) return true
             val setting = setting
             return setting != null && setting.isRuntimeEditable
         }

Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/features/settings/ui/SettingsFragmentPresenter.kt

@@ -69,7 +69,7 @@ class SettingsFragmentPresenter(
         } else if (
             menuTag == MenuTag.GRAPHICS
             && this.gameId.isNullOrEmpty()
-            && !NativeLibrary.IsRunning()
+            && NativeLibrary.IsUninitialized()
             && GpuDriverHelper.supportsCustomDriverLoading()
         ) {
             this.gpuDriver =
@@ -1303,7 +1303,7 @@ class SettingsFragmentPresenter(
 
         if (
             this.gpuDriver != null && this.gameId.isNullOrEmpty()
-            && !NativeLibrary.IsRunning()
+            && NativeLibrary.IsUninitialized()
             && GpuDriverHelper.supportsCustomDriverLoading()
         ) {
             sl.add(

Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/fragments/EmulationFragment.kt

@@ -180,11 +180,11 @@ class EmulationFragment : Fragment(), SurfaceHolder.Callback {
 
     private fun run(isActivityRecreated: Boolean) {
         if (isActivityRecreated) {
-            if (NativeLibrary.IsRunning()) {
+            if (NativeLibrary.IsUninitialized()) {
+                loadPreviousTemporaryState = true
+            } else {
                 loadPreviousTemporaryState = false
                 deleteFile(temporaryStateFilePath)
-            } else {
-                loadPreviousTemporaryState = true
             }
         } else {
             Log.debug("[EmulationFragment] activity resumed or fresh start")
@@ -203,7 +203,7 @@ class EmulationFragment : Fragment(), SurfaceHolder.Callback {
 
     private fun runWithValidSurface() {
         runWhenSurfaceIsValid = false
-        if (!NativeLibrary.IsRunning()) {
+        if (NativeLibrary.IsUninitialized()) {
             NativeLibrary.SetIsBooting()
             val emulationThread = Thread({
                 if (loadPreviousTemporaryState) {

Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/overlay/InputOverlay.kt

@@ -83,7 +83,7 @@ class InputOverlay(context: Context?, attrs: AttributeSet?) : SurfaceView(contex
 
     fun initTouchPointer() {
         // Check if we have all the data we need yet
-        val aspectRatioAvailable = NativeLibrary.IsRunningAndStarted()
+        val aspectRatioAvailable = NativeLibrary.IsRunning()
         if (!aspectRatioAvailable || surfacePosition == null)
             return