- Make --quiet flag functional by threading it through execute_via_bridge()
- Fix --sort hyphen ambiguity with allow_hyphen_values in clap
- Replace deprecated atty crate with std::io::IsTerminal
- Use config.default_limit as fallback when user doesn't specify --limit
- Respect per-command --json flag in QueryOptions format detection
- Remove dead src/daemon/ module and src/ipc/transport.rs
- Deduplicate headless_script lookup (GhidraClient delegates to bridge)
- Fix stop_bridge() SIGTERM race with graceful shutdown wait loop
- Extend config set to support all config keys
- Clean up dead code warnings and remove blanket #![allow(dead_code)]
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>