test consolidation and CI fixes

.github/workflows/test.yml

@@ -10,7 +10,37 @@ env:
   CARGO_TERM_COLOR: always
 
 jobs:
-  test:
+  # Job 1: Unit tests and CLI tests (no Ghidra needed) - ~2 min
+  unit-and-cli:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Rust toolchain
+        uses: dtolnay/rust-toolchain@stable
+
+      - name: Cache Rust
+        uses: Swatinem/rust-cache@v2
+
+      - name: Build
+        run: cargo build --verbose
+
+      - name: Build test fixture
+        run: rustc --edition 2021 -o tests/fixtures/sample_binary tests/fixtures/sample_binary.rs
+
+      - name: Run unit tests
+        run: cargo test --lib --verbose
+
+      - name: Run CLI tests
+        run: cargo test --test e2e --test command_tests --test output_format_integration --verbose
+
+  # Job 2: Read-only integration tests (one bridge) - ~10-15 min
+  readonly-integration:
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
@@ -41,6 +71,15 @@ jobs:
             ~/AppData/Local/ghidra-cli
           key: ghidra-${{ matrix.os }}-v2
 
+      - name: Cache Ghidra projects
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cache/ghidra-cli/projects
+            ~/Library/Caches/ghidra-cli/projects
+            ~/AppData/Local/ghidra-cli/cache/projects
+          key: ghidra-projects-${{ matrix.os }}-${{ hashFiles('tests/fixtures/sample_binary.rs') }}
+
       - name: Build
         run: cargo build --verbose
 
@@ -50,10 +89,117 @@ jobs:
       - name: Setup Ghidra
         run: cargo run -- setup --force
 
-      - name: Run unit tests
-        run: cargo test --lib --verbose
+      - name: Run read-only integration tests
+        run: cargo test --test readonly_tests --verbose
+        env:
+          RUST_LOG: info
 
-      - name: Run integration tests
-        run: cargo test --test '*' --verbose
+  # Job 3: Mutation tests (parallel with job 2) - ~10-15 min
+  mutation-integration:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Java 21
+        uses: actions/setup-java@v4
+        with:
+          distribution: 'temurin'
+          java-version: '21'
+
+      - name: Install Rust toolchain
+        uses: dtolnay/rust-toolchain@stable
+
+      - name: Cache Rust
+        uses: Swatinem/rust-cache@v2
+
+      - name: Cache Ghidra
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.local/share/ghidra-cli
+            ~/Library/Application Support/ghidra-cli
+            ~/AppData/Local/ghidra-cli
+          key: ghidra-${{ matrix.os }}-v2
+
+      - name: Cache Ghidra projects
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cache/ghidra-cli/projects
+            ~/Library/Caches/ghidra-cli/projects
+            ~/AppData/Local/ghidra-cli/cache/projects
+          key: ghidra-projects-${{ matrix.os }}-${{ hashFiles('tests/fixtures/sample_binary.rs') }}
+
+      - name: Build
+        run: cargo build --verbose
+
+      - name: Build test fixture
+        run: rustc --edition 2021 -o tests/fixtures/sample_binary tests/fixtures/sample_binary.rs
+
+      - name: Setup Ghidra
+        run: cargo run -- setup --force
+
+      - name: Run mutation integration tests
+        run: cargo test --test comment_tests --test symbol_tests --test patch_tests --test type_tests --test script_tests --verbose
+        env:
+          RUST_LOG: info
+
+  # Job 4: Infrastructure tests (parallel with jobs 2+3) - ~8-10 min
+  infrastructure:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Java 21
+        uses: actions/setup-java@v4
+        with:
+          distribution: 'temurin'
+          java-version: '21'
+
+      - name: Install Rust toolchain
+        uses: dtolnay/rust-toolchain@stable
+
+      - name: Cache Rust
+        uses: Swatinem/rust-cache@v2
+
+      - name: Cache Ghidra
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.local/share/ghidra-cli
+            ~/Library/Application Support/ghidra-cli
+            ~/AppData/Local/ghidra-cli
+          key: ghidra-${{ matrix.os }}-v2
+
+      - name: Cache Ghidra projects
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cache/ghidra-cli/projects
+            ~/Library/Caches/ghidra-cli/projects
+            ~/AppData/Local/ghidra-cli/cache/projects
+          key: ghidra-projects-${{ matrix.os }}-${{ hashFiles('tests/fixtures/sample_binary.rs') }}
+
+      - name: Build
+        run: cargo build --verbose
+
+      - name: Build test fixture
+        run: rustc --edition 2021 -o tests/fixtures/sample_binary tests/fixtures/sample_binary.rs
+
+      - name: Setup Ghidra
+        run: cargo run -- setup --force
+
+      - name: Run infrastructure tests
+        run: cargo test --test daemon_tests --test reliability_tests --test project_tests --verbose
         env:
           RUST_LOG: info