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To use Proof General with Why3ITP add the following lines in your
.emacs after the line loading proof-general itself.
(autoload 'whyitp-mode "(MY_PATH_TO_WHY3)/share/whyitp/whyitp.el" "Major mode for Why3 ITP." t)
(setq auto-mode-alist (cons '("\\.whyitp" . whyitp-mode) auto-mode-alist))